Interleukin-6 Receptor Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Interleukin-6 Receptor Beta Chain
  Conformer 1
(PDB)
1p9m (A)
  Conformer 2
(PDB)
1bqu (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 106 0.79   115 - 118   169 - 169   195 - 297
2 87 0.74   103 - 114   119 - 168   170 - 194

Sequence


           ______________________________________________________________________________________________________________114_______ 
 1p9m(A) : LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMR 
         :                                                                                                                          
 1bqu(A) : ***************************************************************************************************GLPPEKPKNLSCIVNEGKKMR 
           _______________________________________________________________________________________________________________18_21____ 

           ____________________________________________168_______________________194_______________________________________________ 
 1p9m(A) : CEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT 
         :                                                                                                                          
 1bqu(A) : CEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINS--lSSILKLTWTNPSIKSVIILKYNIQYRT 
           _____________________________________________72________________________98_______________________________________________ 

           _____________________________________________________________________                                                    
 1p9m(A) : KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT***********                                                    
         :                                                                                                                          
 1bqu(A) : KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF                                                    
           _____________________________________________________________________                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.4
Translation
(A)
-0.7
Closure
(%)
2.5
Bending Residues
( green )
  114 - 115
  117 - 120
  168 - 170
  194 - 195
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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