Interstitial Collagenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Interstitial Collagenase
  Conformer 1
(PDB)
2clt (B)
  Conformer 2
(PDB)
1su3 (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 182 1.46   257 - 295   300 - 442
2 172 0.85   89 - 256   296 - 299

Sequence


           ________________________________________________________________________________________________________________________ 
 2clt(B) : **************************************************FVLTEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHR 
         :                                                                                                                          
 1su3(B) : VDLVQKYLEKYYNLKsGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVApRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHR 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________256______________ 
 2clt(B) : DNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHALGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITT 
         :                                                                                                                          
 1su3(B) : DNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITT 
           _______________________________________________________________________________________________________275______________ 

           __________283___________________________________________________________________________________________________________ 
 2clt(B) : IRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDP 
         :                                                                                                                          
 1su3(B) : IRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDP 
           __________302___________________________________________________________________________________________________________ 

           _________________________________________________________                                                                
 2clt(B) : GYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFNC                                                                
         :                                                                                                                          
 1su3(B) : GYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFN*                                                                
           _________________________________________________________                                                                

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
-0.7
Closure
(%)
96.6
Bending Residues
( green )
  256 - 257
  283 - 304
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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