Lysr-Type Regulatory Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysr-Type Regulatory Protein
  Conformer 1
(PDB) 		1iz1 (B)
  Conformer 2
(PDB) 		1iz1 (Q)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 123 0.9   72 - 163   203 - 211   263 - 265   267 - 267   273 - 290
2 69 0.62   3 - 71
3 96 0.53   164 - 202   212 - 262   266 - 266   268 - 272

Sequence


           _____________________________________________________________________71_________________________________________________ 
 1iz1(B) : MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTA 
         :                                                                                                                          
 1iz1(Q) : MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTA 
           _____________________________________________________________________71_________________________________________________ 

           ________________________________________163____________________________________202_____210______________________________ 
 1iz1(B) : TVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASS 
         :                                                                                                                          
 1iz1(Q) : TVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASS 
           ________________________________________163____________________________________202_____210______________________________ 

           ________________259__________272______________________                                                                   
 1iz1(B) : IVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQPPILARFVEHVRRSAKD                                                                   
         :                                                                                                                          
 1iz1(Q) : IVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQPPILARFVEHVRRSA**                                                                   
           ________________259__________272______________________                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.2
Translation
(A) 		0.0
Closure
(%) 		97.7
Bending Residues
( green ) 		  71 - 72
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		7.4
Translation
(A) 		-0.3
Closure
(%) 		25.9
Bending Residues
( green ) 		  163 - 164
  202 - 203
  210 - 212
  259 - 268
  272 - 273
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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