jsmol/j2s/core/package.js
-- required by ClazzNode ajax=false async=true
jsmol/j2s/core/core.z.js
-- required by ClazzNode ajax=false async=true
jsmol/j2s/J/g3d/PixelatorT.js
-- required by J.g3d.Graphics3D ajax=false async=true
JSmol exec jmolApplet start applet null
Jmol JavaScript applet jmolApplet__318536651405988__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet__318536651405988__)
vwrOptions:
{ "name":"jmolApplet","applet":true,"documentBase":"https://dyndom.cmp.uea.ac.uk/dyndom/dyndomRun.do?action=view&ddid=LYSRT1R3","platform":"J.awtjs2d.Platform","fullName":"jmolApplet__318536651405988__","codePath":"https://dyndom.cmp.uea.ac.uk/dyndom/jsmol/j2s/","display":"jmolApplet_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"318536651405988","bgcolor":"#FFFFFF" }
setting document base to "https://dyndom.cmp.uea.ac.uk/dyndom/dyndomRun.do?action=view&ddid=LYSRT1R3"
(C) 2012 Jmol Development
Jmol Version: 14.2.12_2015.02.11 2015-02-11 06:00
java.vendor: Java2Script (HTML5)
java.version: 2014-12-19 08:17:57 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet (signed)
jsmol/j2s/core/corescript.z.js
-- required by ClazzNode ajax=true async=false
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet__318536651405988__ ready
script 1 started
FileManager.getAtomSetCollectionFromFile(dyndommorphdb/LYSRT1R3.pdb)
FileManager opening 1 https://dyndom.cmp.uea.ac.uk/dyndom/dyndommorphdb/LYSRT1R3.pdb
The Resolver thinks Pdb
jsmol/j2s/core/corebio.z.js
-- required by ClazzNode ajax=true async=false
jsmol/j2s/J/render/MeshRenderer.js
-- required by J.renderbio.BioShapeRenderer ajax=true async=false
jsmol/j2s/J/shape/Mesh.js
-- required by J.renderbio.BioShapeRenderer ajax=true async=false
jsmol/j2s/J/renderbio/RocketRenderer.js
-- required by J.renderbio.RocketsRenderer ajax=true async=false
#jmolScript: select all; color grey; background white;
#jmolScript: select 72- 163, 203- 211, 263- 265, 267- 267, 273- 290
#jmolScript: color [0 ,0 ,255]
#jmolScript: select 3- 71
#jmolScript: color [255,0 ,0 ]
#jmolScript: select 293- 311
#jmolScript: color [0 ,0 ,255]
#jmolScript: backbone 100;
#jmolScript: select 312- 325
#jmolScript: color [255,0 ,0 ]
#jmolScript: backbone 100;
#jmolScript: select 164- 202, 212- 262, 266- 266, 268- 272
#jmolScript: color [255,255,0 ]
#jmolScript: select 326- 356
#jmolScript: color [0 ,0 ,255]
#jmolScript: backbone 100;
#jmolScript: select 357- 370
#jmolScript: color [255,255,0 ]
#jmolScript: backbone 100;
#jmolScript: select 71- 72
#jmolScript: color [0 ,255,0 ]
#jmolScript: select 163- 164, 210- 212, 265- 266, 267- 268
#jmolScript: color [0 ,255,0 ]
#jmolScript: select 202- 203, 259- 264, 266- 267, 272- 273
#jmolScript: color [0 ,255,0 ]
#jmolScript: select all
#jmolScript: anim mode loop 0.5 0.5;anim on;
#jmolScript: set echo top left;color echo [x0D0D99];echo "DynDom"
#jmolScript: set antialiasDisplay ON
DNA BINDING PROTEIN 18-SEP-02 1IZ1
CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL
REGULATOR
found biomolecule 1: A, B, P, Q
biomolecule 1: number of transforms: 1
jsmol/j2s/core/coresym.z.js
-- required by ClazzNode ajax=true async=false
Time for openFile(dyndommorphdb/LYSRT1R3.pdb): 1765 ms
reading 55656 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
24 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
55656 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
DNA BINDING PROTEIN 18-SEP-02 1IZ1
CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL
REGULATOR
found biomolecule 1: A, B, P, Q
Adding embedded #jmolscript: select ({2241:2318});backbone only;select ({4560:4637});backbone only;select ({6879:6956});backbone only;select ({9198:9275});backbone only;select ({11517:11594});backbone only;select ({13836:13913});backbone only;select ({16155:16232});backbone only;select ({18474:18551});backbone only;select ({20793:20870});backbone only;select ({23112:23189});backbone only;select ({25431:25508});backbone only;select ({27750:27827});backbone only;select ({30069:30146});backbone only;select ({32388:32465});backbone only;select ({34707:34784});backbone only;select ({37026:37103});backbone only;select ({39345:39422});backbone only;select ({41664:41741});backbone only;select ({43983:44060});backbone only;select ({46302:46379});backbone only;select ({48621:48698});backbone only;select ({50940:51017});backbone only;select ({53259:53336});backbone only;select ({55578:55655});backbone only;select *; select all; color grey; background white; select 72- 163, 203- 211, 263- 265, 267- 267, 273- 290; color [0 ,0 ,255]; select 3- 71; color [255,0 ,0 ]; select 293- 311; color [0 ,0 ,255]; backbone 100; select 312- 325; color [255,0 ,0 ]; backbone 100; select 164- 202, 212- 262, 266- 266, 268- 272; color [255,255,0 ]; select 326- 356; color [0 ,0 ,255]; backbone 100; select 357- 370; color [255,255,0 ]; backbone 100; select 71- 72; color [0 ,255,0 ]; select 163- 164, 210- 212, 265- 266, 267- 268; color [0 ,255,0 ]; select 202- 203, 259- 264, 266- 267, 272- 273; color [0 ,255,0 ]; select all; anim mode loop 0.5 0.5;anim on; set echo top left;color echo [x0D0D99];echo "DynDom"; set antialiasDisplay ON
24 models
jsmol/j2s/J/thread/AnimationThread.js
-- required by ClazzNode ajax=true async=false
jsmol/j2s/J/g3d/HermiteRenderer.js
-- required by ClazzNode ajax=true async=false
jsmol/j2s/core/coretext.z.js
-- required by ClazzNode ajax=true async=false
DynDom
1iz1 (B)
1iz1 (B)
1iz1 (B)
1iz1 (Q)
1iz1 (Q)
1iz1 (Q)
Script completed
Jmol script terminated
