DynDom - Protein Domain Motions

Maltose/maltodextrin Transport Atp-Binding Protein Malk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Maltose/maltodextrin Transport Atp-Binding Protein Malk
Conformer 1 (PDB)	1q12 (D)
Conformer 2 (PDB)	2awo (D)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	84	0.86	6 - 26 32 - 156 186 - 188 203 - 207
2	46	0.59	27 - 31 157 - 185 189 - 202 218 - 218
3	160	0.76	208 - 217 219 - 368

Sequence

`_______________________26___31__________________________________________________________________________________________` `1q12(D) : VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL` `:` `2awo(D) : ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV-----------------------------------------` `_______________________26___31__________________________________________________________________________________________` `________________________________156__________________________185______________202__207_______217________________________` `1q12(D) :` `QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF` `:` `2awo(D) :` `-----------------------------ePSVFLLDEP---lDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF` `________________________________156__________________________185______________202__207_______217________________________` `________________________________________________________________________________________________________________________` `1q12(D) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA` `:` `2awo(D) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA` `________________________________________________________________________________________________________________________` `____________` `1q12(D) : CRRLHKEPG*` `:` `2awo(D) : CRRLHKEPGVAS` `____________`

Morph

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This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Fixed Domain	Moving Domain	Rotation Angle	Translation (A)	Closure	Bending Residues
1	2	9.0	0.3	89.6	26 - 27 31 - 32 156 - 157 185 - 186 188 - 189 202 - 203	Bending Region Analysis
1	3	10.6	-0.2	79.4	207 - 208	Bending Region Analysis
3	2	12.9	-0.7	11.7	217 - 219	Bending Region Analysis