Maltose Abc Transporter, Periplasmic Maltose- Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose Abc Transporter, Periplasmic Maltose- Binding Protein
  Conformer 1
(PDB)
2ghb (A)
  Conformer 2
(PDB)
2gha (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 213 0.54   111 - 264   316 - 374
2 156 1.05   6 - 110   265 - 315

Sequence


           ________________________________________________________________________________________________________109_____________ 
 2ghb(A) : *QPKLTIWCSEKQVDILQKLGEEFKAKYGVEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLIEPIPNFSDLKNFYETALNAFSYGGKLYGIPYAMEAIALIYNKDYV 
         :                                                                                                                          
 2gha(A) : MQPKLTIWCSEKQVDILQKLGEEFKAKYGVEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLIEPIPNFSDLKNFYETALNAFSYGGKLYGIPYAMEAIALIYNKDYV 
           ________________________________________________________________________________________________________109_____________ 

           ________________________________________________________________________________________________________________________ 
 2ghb(A) : PEPPKTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGVKLLKRLVDEGILDPSDNYQIMDSMFREGQAAMIINGPWAIKAYKDAG 
         :                                                                                                                          
 2gha(A) : PEPPKTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGVKLLKRLVDEGILDPSDNYQIMDSMFREGQAAMIINGPWAIKAYKDAG 
           ________________________________________________________________________________________________________________________ 

           __________________263____________________________________________310____________________________________________________ 
 2ghb(A) : IDYGVAPIPDLEPGVPARPFVGVQGFMVNAKSPNKLLAIEFLTSFIAKKETMYRIYLGDPRLPSRKDVLELVKDNPDVVGFTLSAANGIPMPNVPQMAAVWAAMNDALNLVVNGKATVEE 
         :                                                                                                                          
 2gha(A) : IDYGVAPIPDLEPGVPARPFVGVQGFMVNAKSPNKLLAIEFLTSFIAKKETMYRIYLGDPRLPSRKDVLELVKDNPDVVGFTLSAANGIPMPNVPQMAAVWAAMNDALNLVVNGKATVEE 
           __________________263____________________________________________310____________________________________________________ 

           ______________                                                                                                           
 2ghb(A) : ALKNAVERIKAQIQ                                                                                                           
         :                                                                                                                          
 2gha(A) : ALKNAVERIKAQIQ                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
52.3
Translation
(A)
-0.5
Closure
(%)
99.4
Bending Residues
( green )
  109 - 113
  263 - 265
  310 - 326
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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