Maltose Phosphorylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose Phosphorylase
  Conformer 1
(PDB)
1h54 (B)
  Conformer 2
(PDB)
1h54 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 401 0.49   61 - 79   312 - 317   357 - 655   675 - 751
2 347 0.65   3 - 60   80 - 311   318 - 356   656 - 674

Sequence


           __________________________________________________________60_________________79_________________________________________ 
 1h54(B) : MKRIFEVQPWNVITHTFDPKDKRLQESMTSLGNGYMGMRGDFEEGYSGDSLQGIYLGGVWYPDKTRVGWWKNGYPKYFGKVVNAVNFIKLPIEINGEPVDLAKDKISDFTLDLDMHQGVL 
         :                                                                                                                          
 1h54(A) : MKRIFEVQPWNVITHTFDPKDKRLQESMTSLGNGYMGMRGDFEEGYSGDSLQGIYLGGVWYPDKTRVGWWKNGYPKYFGKVVNAVNFIKLPIEINGEPVDLAKDKISDFTLDLDMHQGVL 
           __________________________________________________________60_________________79_________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1h54(B) : NRSFVVERGAVRVALNFQRFLSVAQPELSVQKVTVKNLSDAEVDVTLKPSIDADVMNEEANYDERFWDVLATDQQADRGSIVAKTTPNPFGTPRFTSGMEMRLVTDLKNVAITQPNEKEV 
         :                                                                                                                          
 1h54(A) : NRSFVVERGAVRVALNFQRFLSVAQPELSVQKVTVKNLSDAEVDVTLKPSIDADVMNEEANYD-RFWDVLATDQQADRGSIVAKTTPNPFGTPRFTSGMEMRLVTDLKNVAITQPNEKEV 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________311__________________________________________356____ 
 1h54(B) : TTAYTGKLAPQASAELEKRVIVVTSRDYDTQESLTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDDESQQGIRFNLFQLFSTYYGEDARLNIGPKGFTGEKYGGATYWDT 
         :                                                                                                                          
 1h54(A) : TTAYTGKLAPQASAELEKRVIVVTSRDYDTQESLTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDDESQQGIRFNLFQLFSTYYGEDARLNIGPKGFTGEKYGGATYWDT 
           ____________________________________________________________________311__________________________________________356____ 

           ________________________________________________________________________________________________________________________ 
 1h54(B) : EAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINAQEQGLKGALFPMVTFDGIECHNEWEITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADRVHFSKRNNQYMIH 
         :                                                                                                                          
 1h54(A) : EAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINAQEQGLKGALFPMVTFDGIECHNEWEITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADRVHFSKRNNQYMIH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1h54(B) : GVTGADEYENNVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDVSDEEKTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILRSPYIKQGDVLQGI 
         :                                                                                                                          
 1h54(A) : GVTGADEYENNVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDVSDEEKTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILRSPYIKQGDVLQGI 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________655________________674______________________________________________ 
 1h54(B) : WDFIDDYTPEQKKANFDFYEPLTVHESSLSPAIHSVLAADLHYEDKAVELYSRTARLDLDNYNNDTTDGLHITSMTGAWIAVVQGFAGMRVRDGQLHYAPFLPKTWTSYTFRQVFRDRLI 
         :                                                                                                                          
 1h54(A) : WDFIDDYTPEQKKANFDFYEPLTVHESSLSPAIHSVLAADLHYEDKAVELYSRTARLDLDNYNNDTTDGLHITSMTGAWIAVVQGFAGMRVRDGQLHYAPFLPKTWTSYTFRQVFRDRLI 
           ____________________________________________________655________________674______________________________________________ 

           __________________________________                                                                                       
 1h54(B) : EVSVHADGPHFKLLSGEPLTIDVAGAAAAAAAAA                                                                                       
         :                                                                                                                          
 1h54(A) : EVSVHADGPHFKLLSGEPLTIDVAGAAAAAAAA*                                                                                       
           __________________________________                                                                                       

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.5
Translation
(A)
-0.9
Closure
(%)
95.7
Bending Residues
( green )
  60 - 61
  79 - 82
  311 - 318
  356 - 357
  655 - 656
  674 - 676
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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