Methionyl-Trna Fmet Formyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Methionyl-Trna Fmet Formyltransferase
  Conformer 1
(PDB) 		1fmt (B)
  Conformer 2
(PDB) 		2fmt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 171 0.58   112 - 135   142 - 145   148 - 152   154 - 173   195 - 312
2 132 0.48   4 - 111   136 - 141   146 - 147   153 - 153   174 - 194

Sequence


           ____________________________________________________________________________________________________________111_________ 
 1fmt(B) : *ESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRP------lMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGA 
         :                                                                                                                          
 2fmt(A) : SESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGA 
           ____________________________________________________________________________________________________________111_________ 

           ____________135__140__145____152__________________173__________________194______________________________________________ 
 1fmt(B) : APIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEI 
         :                                                                                                                          
 2fmt(A) : APIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEI 
           ____________135__140__145____152__________________173__________________194______________________________________________ 

           __________________________________________________________________________                                               
 1fmt(B) : EGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLV                                               
         :                                                                                                                          
 2fmt(A) : EGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLV                                               
           __________________________________________________________________________                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.3
Translation
(A) 		0.1
Closure
(%) 		93.1
Bending Residues
( green ) 		  111 - 112
  135 - 136
  140 - 142
  145 - 148
  152 - 154
  173 - 174
  194 - 196
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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