Methionyl-Trna Fmet Formyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Methionyl-Trna Fmet Formyltransferase
  Conformer 1
(PDB) 		2fmt (A)
  Conformer 2
(PDB) 		1fmt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 183 0.58   3 - 112   114 - 120   130 - 154   159 - 162   167 - 170   174 - 212
2 121 0.63   113 - 113   121 - 129   155 - 158   163 - 166   171 - 173   213 - 312

Sequence


           _____________________________________________________________________________________________________________112_____120 
 2fmt(A) : SESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGA 
         :                                                                                                                          
 1fmt(A) : SESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRP------lMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGA 
           _____________________________________________________________________________________________________________112_____120 

           ______129______________________154_158_____166_170_______________________________________212____________________________ 
 2fmt(A) : APIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEI 
         :                                                                                                                          
 1fmt(A) : APIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEI 
           ______129______________________154_158_____166_170_______________________________________212____________________________ 

           __________________________________________________________________________                                               
 2fmt(A) : EGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLV                                               
         :                                                                                                                          
 1fmt(A) : EGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLV                                               
           __________________________________________________________________________                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.2
Translation
(A) 		0.1
Closure
(%) 		31.2
Bending Residues
( green ) 		  112 - 114
  120 - 121
  129 - 130
  154 - 155
  158 - 163
  166 - 167
  170 - 171
  173 - 175
  212 - 213
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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