Methionyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Methionyl-Trna Synthetase
  Conformer 1
(PDB)
1woy (A)
  Conformer 2
(PDB)
1a8h  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 463 0.57   3 - 123   157 - 498
2 33 0.88   124 - 156

Sequence


           ____________________________________________________________________________________________________________________119_ 
 1woy(A) : MEKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 
         :                                                                                                                          
 1a8h    : MEKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 
           ____________________________________________________________________________________________________________________119_ 

           _______________________________154______________________________________________________________________________________ 
 1woy(A) : EYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDY 
         :                                                                                                                          
 1a8h    : EYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTYVWFDALLNYVSALDY 
           _______________________________154______________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1woy(A) : PEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRT 
         :                                                                                                                          
 1a8h    : PEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1woy(A) : RAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 
         :                                                                                                                          
 1a8h    : RAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 
           ________________________________________________________________________________________________________________________ 

           ____________________                                                                                                     
 1woy(A) : WGLAEPRPIPEEAPVLFPKK                                                                                                     
         :                                                                                                                          
 1a8h    : WGLAEPRPIPEEAPVLFPKK                                                                                                     
           ____________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
32.8
Translation
(A)
-2.7
Closure
(%)
99.5
Bending Residues
( green )
  119 - 125
  154 - 159
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: missing

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