Methylene Tetrahydromethanopterin Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Methylene Tetrahydromethanopterin Dehydrogenase
  Conformer 1
(PDB)
1lu9 (A)
  Conformer 2
(PDB)
1lua (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 166 0.39   96 - 99   102 - 258   282 - 286
2 117 0.22   4 - 95   100 - 101   259 - 281

Sequence


           ____________________________________________________________________________________________95__________________________ 
 1lu9(A) : SKKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKKRFFGPFRVSCMLDSNGSNTTAAAGVALVVKAAGGSVKGK 
         :                                                                                                                          
 1lua(C) : SKKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKKRFFGPFRVSCMLDSNGSNTTAAAGVALVVKAAGGSVKGK 
           ____________________________________________________________________________________________95__________________________ 

           ________________________________________________________________________________________________________________________ 
 1lu9(A) : KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEY 
         :                                                                                                                          
 1lua(C) : KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEY 
           ________________________________________________________________________________________________________________________ 

           _____________257________________276____________                                                                          
 1lu9(A) : GGKRAFGALGIGGLKLKLHRACIAKLFESSEGVFDAEEIYKLAKEMA                                                                          
         :                                                                                                                          
 1lua(C) : GGKRAFGALGIGGLKLKLHRACIAKLFESSEGVFDAEEIYKLAKEMA                                                                          
           _____________257________________276____________                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.3
Translation
(A)
0.1
Closure
(%)
18.2
Bending Residues
( green )
  95 - 102
  257 - 260
  276 - 283
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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