Mhc Class I Chain-Related Protein A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Class I Chain-Related Protein A
  Conformer 1
(PDB)
1hyr (C)
  Conformer 2
(PDB)
1b3j (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 167 2.09   3 - 179
2 93 1.11   180 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 1hyr(C) : MEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCDRQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNSTRSSQHFYYDGELFLS 
         :                                                                                                                          
 1b3j(A) : *EPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCDRQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNSTRSSQHFYYDGELFLS 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________179____________________________________________________________ 
 1hyr(C) : QNLETKEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNG 
         :                                                                                                                          
 1b3j(A) : QNLETKEWTMPQSSRAQTLAMNVRNFLKEDAM----------aDCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNG 
           _________________________________________________________179____________________________________________________________ 

           ___________________________________                                                                                      
 1hyr(C) : TYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPS                                                                                      
         :                                                                                                                          
 1b3j(A) : TYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPS                                                                                      
           ___________________________________                                                                                      

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
107.6
Translation
(A)
0.3
Closure
(%)
80.5
Bending Residues
( green )
  179 - 181
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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