Mhc Class I H-2dd Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Class I H-2dd Heavy Chain
  Conformer 1
(PDB) 		1qo3 (A)
  Conformer 2
(PDB) 		1ddh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 173 0.76   4 - 173   177 - 179
2 96 1.12   174 - 176   180 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 1qo3(A) : *SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 
         :                                                                                                                          
 1ddh(A) : MSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRANGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________171_____179_____________________________________________________________ 
 1qo3(A) : CDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGT 
         :                                                                                                                          
 1ddh(A) : CDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLATDPPKAHVTHHRRPEGDVTLRCWALGFYPAEITLTWQLNGEELTQEMELVETRPAGDGT 
           ________________________________________________171_____179_____________________________________________________________ 

           ___________________________________                                                                                      
 1qo3(A) : FQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWG                                                                                      
         :                                                                                                                          
 1ddh(A) : FQKWASVVVPLGKQQKYTCHVEHEGLPEPLTLRW*                                                                                      
           ___________________________________                                                                                      

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.6
Translation
(A) 		1.3
Closure
(%) 		62.1
Bending Residues
( green ) 		  171 - 177
  179 - 181
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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