Mlc Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mlc Protein
  Conformer 1
(PDB)
1z6r (D)
  Conformer 2
(PDB)
1z6r (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 115 0.52   83 - 84   86 - 192   382 - 388   402 - 403
2 69 0.48   14 - 82   85 - 85   389 - 401   404 - 404
3 185 0.6   193 - 381

Sequence


           ______________________________________________________81________________________________________________________________ 
 1z6r(D) : QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHElEAHLVQELgLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLER 
         :                                                                                                                          
 1z6r(A) : QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHElEAHLVQELgLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLER 
           ______________________________________________________81________________________________________________________________ 

           __________________________________________192___________________________________________________________________________ 
 1z6r(D) : LTSIAITLPGIIDTENGIVHRpFYEDVKEpLGEALEQHTGVPVYIQHDISAWTaEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 
         :                                                                                                                          
 1z6r(A) : LTSIAITLPGIIDTENGIVHRpFYEDVKEpLGEALEQHTGVPVYIQHDISAWTaEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 
           __________________________________________192___________________________________________________________________________ 

           ________________________________________________________________________________________________________378______388____ 
 1z6r(D) : ASVDSILELAQLRLNQSsSlHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIvNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTaGAALVKD 
         :                                                                                                                          
 1z6r(A) : ASVDSILELAQLRLNQSsSlHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIvNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTaGAALVKD 
           ________________________________________________________________________________________________________378______388____ 

           _____401_____                                                                                                            
 1z6r(D) : AyNGSLLIRLLQG                                                                                                            
         :                                                                                                                          
 1z6r(A) : AyNGSLLIRLLQG                                                                                                            
           _____401_____                                                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.5
Translation
(A)
-0.1
Closure
(%)
93.2
Bending Residues
( green )
  81 - 86
  388 - 389
  401 - 404
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
21.5
Translation
(A)
-0.2
Closure
(%)
26.0
Bending Residues
( green )
  192 - 195
  378 - 386
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download