DynDom - Protein Domain Motions

Mlc Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Mlc Protein
Conformer 1 (PDB)	1z6r (A)
Conformer 2 (PDB)	1z6r (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	215	1.0	14 - 214 226 - 226 237 - 241 378 - 404
2	154	0.99	215 - 225 227 - 236 242 - 377

Sequence

`________________________________________________________________________________________________________________________` `1z6r(A) : QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHElEAHLVQELgLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLER` `:` `1z6r(B) : QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHElEAHLVQELgLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLER` `________________________________________________________________________________________________________________________` `______________________________________________________________213_________225_______235_________________________________` `1z6r(A) : LTSIAITLPGIIDTENGIVHRpFYEDVKEpLGEALEQHTGVPVYIQHDISAWTaEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI` `:` `1z6r(B) : LTSIAITLPGIIDTENGIVHRpFYEDVKEpLGEALEQHTGVPVYIQHDISAWTaEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI` `______________________________________________________________213_________225_______235_________________________________` `_______________________________________________________________________________________________________377______________` `1z6r(A) : ASVDSILELAQLRLNQSsSlHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIvNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTaGAALVKD` `:` `1z6r(B) : ASVDSILELAQLRLNQSsSlHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIvNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTaGAALVKD` `_______________________________________________________________________________________________________377______________` `_____________` `1z6r(A) : AyNGSLLIRLLQG` `:` `1z6r(B) : AyNGSLLIRLLQG` `_____________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	20.9
Translation (A)	0.7
Closure (%)	93.6
Bending Residues ( green )	213 - 215 225 - 227 235 - 242 377 - 379
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file