Molybdopterin-Guanine Dinucleotide Biosynthesis Protein B (Mobb)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Molybdopterin-Guanine Dinucleotide Biosynthesis Protein B (Mobb)
  Conformer 1
(PDB) 		2f1r (A)
  Conformer 2
(PDB) 		2f1r (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 87 0.56   6 - 35   101 - 158
2 34 0.46   54 - 87

Sequence


           _______________________________35______________________________________86_______________________________________________ 
 2f1r(A) : LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRk-DSWKIYNSGADVVIASPVKLAFIRRVSEEEGNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVV 
         :                                                                                                                          
 2f1r(B) : LILSIVGTS-sGKTTLITRMMPILRERGLRVAVVKRHAdSWKIYNSGADVVIASPVKLAFIRRVSEEEGNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVV 
           _______________________________35______________________________________86_______________________________________________ 

           _____________________________                                                                                            
 2f1r(A) : CDERVDGHKWFRRDEVERIAEFILSLLRE                                                                                            
         :                                                                                                                          
 2f1r(B) : CDERVDGHKWFRRDEVERIAEFILSLL**                                                                                            
           _____________________________                                                                                            

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.8
Translation
(A) 		0.0
Closure
(%) 		21.0
Bending Residues
( green ) 		  35 - 54
  86 - 101
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download