Monoclonal Anti-Estradiol 10G6d6 Immunoglobulin Lambda Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Monoclonal Anti-Estradiol 10G6d6 Immunoglobulin Lambda Chain
  Conformer 1
(PDB)
1jn6 (A)
  Conformer 2
(PDB)
1jnh (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 101 0.66   11 - 13   107 - 208
2 98 0.58   6 - 10   14 - 106

Sequence


           ________10_13__________________________________________________________________________________________106______________ 
 1jn6(A) : QAVVTQESALTTSPGETVTLTCRSSSGAITTSHYANWIQEKPDHLFTGLISGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYICALWFSNQFIFGSGTKVTVkSSPSVTLFPPS 
         :                                                                                                                          
 1jnh(C) : QAVVTQESALTTSPGETVTLTCRSSSGAITTSHYANWIQEKPDHLFTGLISGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYICALWFSNQFIFGSGTKVTVkSSPSVTLFPPS 
           ________10_13__________________________________________________________________________________________106______________ 

           ________________________________________________________________________________________                                 
 1jn6(A) : SEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS**                                 
         :                                                                                                                          
 1jnh(C) : SEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSAA                                 
           ________________________________________________________________________________________                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.8
Translation
(A)
1.7
Closure
(%)
77.7
Bending Residues
( green )
  10 - 11
  13 - 14
  106 - 114
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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