Mrna Decapping Enzyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mrna Decapping Enzyme
  Conformer 1
(PDB) 		1st0 (A)
  Conformer 2
(PDB) 		1xmm (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 190 1.19   145 - 334
2 94 0.63   42 - 144

Sequence


           ________________________________________________________________________________________________________144_____________ 
 1st0(A) : APVRLPFSGFRLQKVLRESARDKIIFLHGKVNEASGDGDGEDAVVILEKTPFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDD 
         :                                                                                                                          
 1xmm(B) : **VRLPFSGFRLQKVLRESARDKIIFLHGKVN---------dAVVILEKTPFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDD 
           ________________________________________________________________________________________________________144_____________ 

           ________________________________________________________________________________________________________________________ 
 1st0(A) : YRNITLPHLESQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLN 
         :                                                                                                                          
 1xmm(B) : YRNITLPHLESQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLH 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________                                                             
 1st0(A) : VHFTALGFEAPGSGVERAHLLAEVIENLECDPRHYQQRTLTFALRADDPLLKLLQEAQQS                                                             
         :                                                                                                                          
 1xmm(B) : VHFTALGFEAPGSGVERAHLLAEVIENLECDPRHYQQRTLTFALRADDPLLKLLQEAQQ*                                                             
           ____________________________________________________________                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		75.2
Translation
(A) 		1.1
Closure
(%) 		100.0
Bending Residues
( green ) 		  144 - 148
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download