Multidrug Resistance Protein Mexa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Multidrug Resistance Protein Mexa
  Conformer 1
(PDB) 		1vf7 (C)
  Conformer 2
(PDB) 		1vf7 (M)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 164 0.92   30 - 72   137 - 257
2 64 0.42   73 - 136

Sequence


           _______________________________________________72___________________________________________________________134_________ 
 1vf7(C) : TVTLNTELPGRTNAFRIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQARINLRYTKVLSPISG 
         :                                                                                                                          
 1vf7(M) : ****NTELPGRTNAFRIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQARINLRYTKVLSPISG 
           _______________________________________________72___________________________________________________________134_________ 

           ________________________________________________________________________________________________________________________ 
 1vf7(C) : RIGRSAVTEGALVTNGQANAMATVQQLDPIYVDVTQPSTALLRLRRELASGQLERAGDNAAKVSLKLEDGSQYPLEGRLEFSEVSVDEGTGSVTIRAVFPNPNNELLPGMFVHAQLQEGV 
         :                                                                                                                          
 1vf7(M) : RIGRSAVTEGALVTNGQANAMATVQQLDPIYVDVTQPSTALLRLRRELASGQLERAGDNAAKVSLKLEDGSQYPLEGRLEFSEVSVDEGTGSVTIRAVFPNPNNELLPGMFVHAQL**** 
           ________________________________________________________________________________________________________________________ 

           ______                                                                                                                   
 1vf7(C) : KQKAIL                                                                                                                   
         :                                                                                                                          
 1vf7(M) : ******                                                                                                                   
           ______                                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.7
Translation
(A) 		-0.2
Closure
(%) 		9.4
Bending Residues
( green ) 		  72 - 73
  134 - 137
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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