Multidrug Resistance Protein Mexa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Multidrug Resistance Protein Mexa
  Conformer 1
(PDB)
1vf7 (M)
  Conformer 2
(PDB)
1t5e (H)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 70 0.4   40 - 74   133 - 167
2 95 0.9   33 - 39   168 - 255
3 58 0.54   75 - 132

Sequence


           __________39________________________________73________________________________________________________132_______________ 
 1vf7(M) : NTELPGRTNAFRIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGR 
         :                                                                                                                          
 1t5e(H) : *TELPGRTNAFRIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGR 
           __________39________________________________73________________________________________________________132_______________ 

           _________________167____________________________________________________________________________________________         
 1vf7(M) : SAVTEGALVTNGQANAMATVQQLDPIYVDVTQPSTALLRLRRELASGQLERAGDNAAKVSLKLEDGSQYPLEGRLEFSEVSVDEGTGSVTIRAVFPNPNNELLPGMFVHAQL         
         :                                                                                                                          
 1t5e(H) : SAVTEGALVTNGQANAMATVQQLDPIYVDVTQPSTALLRLRRELASGQLERAGDNAAKVSLKLEDGSQYPLEGRLEFSEVSVDEGTGSVTIRAVFPNPNNELLPGMFVHAQL         
           _________________167____________________________________________________________________________________________         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.7
Translation
(A)
-0.6
Closure
(%)
41.9
Bending Residues
( green )
  39 - 42
  167 - 168
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
10.1
Translation
(A)
0.1
Closure
(%)
53.9
Bending Residues
( green )
  73 - 75
  132 - 135
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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