Myoglobin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Myoglobin
  Conformer 1
(PDB) 		2in4 (A)
  Conformer 2
(PDB) 		1hrm  
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 101 0.9   5 - 77   105 - 132
2 44 0.57   78 - 104   133 - 149

Sequence


           ___________________________________________________________________________77________________________104________________ 
 2in4(A) : GLSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHP 
         :                                                                                                                          
 1hrm    : GLSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSYATKHKIPIKYLEFISDAIIHVLHSKHP 
           ___________________________________________________________________________77________________________104________________ 

           _________132_____________________                                                                                        
 2in4(A) : GDFGADAQGAMTKALELFRNDIAAKYKELGFQG                                                                                        
         :                                                                                                                          
 1hrm    : GDFGADAQGAMTKALELFRNDIAAKYKELGFQG                                                                                        
           _________132_____________________                                                                                        

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.4
Translation
(A) 		-0.2
Closure
(%) 		65.8
Bending Residues
( green ) 		  77 - 79
  104 - 105
  132 - 133
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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