Myosin Va

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Myosin Va
  Conformer 1
(PDB) 		1w7j (A)
  Conformer 2
(PDB) 		1w8j (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 163 1.03   104 - 108   153 - 157   183 - 192   224 - 225   229 - 232   236 - 238   435 - 439   442 - 475   490 - 568   636 - 657
2 216 1.67   8 - 103   109 - 152   158 - 182   193 - 198   226 - 228   233 - 235   430 - 434   440 - 441   658 - 693
3 238 0.71   199 - 223   239 - 429   572 - 593
4 82 0.62   476 - 487   695 - 764

Sequence


           ___________________________________________________________________________________________________103__108_____________ 
 1w7j(A) : AASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGE 
         :                                                                                                                          
 1w8j(A) : AASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRL----dLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGE 
           ___________________________________________________________________________________________________103__108_____________ 

           __________________________150_____________________________182_____________198_______________________224_228_______238___ 
 1w7j(A) : DIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRT 
         :                                                                                                                          
 1w8j(A) : DIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVS------nVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRT 
           __________________________150_____________________________182_____________198_______________________224_228_______238___ 

           ________________________________________________________________________________________________________________________ 
 1w7j(A) : YLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFC 
         :                                                                                                                          
 1w8j(A) : YLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFC 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________426_____434__439_______________________________473________ 
 1w7j(A) : DLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQ 
         :                                                                                                                          
 1w8j(A) : DLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQ 
           ______________________________________________________________426_____434__439_______________________________473________ 

           484_________________________________________________________________________________568______________________593________ 
 1w7j(A) : IPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQ------k 
         :                                                                                                                          
 1w8j(A) : IPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQtSKEHKK 
           484_________________________________________________________________________________568______________________593________ 

           ____________________657_________________________________693_____________________________________________________________ 
 1w7j(A) : TVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAG 
         :                                                                                                                          
 1w8j(A) : TVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAG 
           ____________________657_________________________________693_____________________________________________________________ 

           ______________________________________                                                                                   
 1w7j(A) : QVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR                                                                                   
         :                                                                                                                          
 1w8j(A) : QVAYLEKIRADK**************************                                                                                   
           ______________________________________                                                                                   

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.6
Translation
(A) 		0.0
Closure
(%) 		51.7
Bending Residues
( green ) 		  98 - 99
  102 - 103
  122 - 123
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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