N-Acylamino Acid Racemase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name N-Acylamino Acid Racemase
  Conformer 1
(PDB) 		2ggg (C)
  Conformer 2
(PDB) 		1xs2 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 282 0.6   8 - 138   165 - 165   208 - 212   219 - 373
2 74 0.54   139 - 164   166 - 207   213 - 218

Sequence


           ________________________________________________________________________________________________________________________ 
 2ggg(C) : RMFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGEGVQGVAEGTMEARPMYREETICGALCLLRGTFLPAILGQTFANPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVP 
         :                                                                                                                          
 1xs2(B) : RMFKIEAAEIVVARLPLK----------tHKVVPLLILHGEGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVP 
           ________________________________________________________________________________________________________________________ 

           __________138_______________________164________________________________________207__212___218___________________________ 
 2ggg(C) : LGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPGWDVQPVRATREAFPDIRLTVDANSAYTLADAGRLRQLDEYDLTYIEQPLAWDDLVDHAELARRIRTPLCLD 
         :                                                                                                                          
 1xs2(B) : LGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPGWDVQPVRATREAFPDIRLTVDANSAYTLADAGRLRQLDEYDLTYIEQPLAWDDLVDHAELARRIRTPLCLD 
           __________138_______________________164________________________________________207__212___218___________________________ 

           ________________________________________________________________________________________________________________________ 
 2ggg(C) : ESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLAT 
         :                                                                                                                          
 1xs2(B) : ESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLAT 
           ________________________________________________________________________________________________________________________ 

           __________                                                                                                               
 2ggg(C) : VTEAQEEHRA                                                                                                               
         :                                                                                                                          
 1xs2(B) : VTEAQEEHRA                                                                                                               
           __________                                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.8
Translation
(A) 		0.2
Closure
(%) 		98.9
Bending Residues
( green ) 		  138 - 142
  164 - 166
  207 - 208
  212 - 213
  218 - 219
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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