Nadh Pyrophosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nadh Pyrophosphatase
  Conformer 1
(PDB) 		1vk6 (A)
  Conformer 2
(PDB) 		2gb5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 126 0.93   83 - 85   128 - 254
2 119 1.08   3 - 82   86 - 127

Sequence


           ______________________________________________________________________________________82________________________________ 
 1vk6(A) : *******HdRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDgSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEyPSKTEWAlC 
         :                                                                                                                          
 2gb5(A) : KIHHHHHHdRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDgSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEyPSKTEWAlC 
           ______________________________________________________________________________________82________________________________ 

           ________127_____________________________________________________________________________________________________________ 
 1vk6(A) : SHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVeESGIKVKNLRYVTSQPWPFPQSLtAFaEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGT 
         :                                                                                                                          
 2gb5(A) : SHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVeESGIKVKNLRYVTSQPWPFPQSLtAFaEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGT 
           ________127_____________________________________________________________________________________________________________ 

           _________________                                                                                                        
 1vk6(A) : VARRLIEDTVAcRAEY*                                                                                                        
         :                                                                                                                          
 2gb5(A) : VARRLIEDTVAcRAEYE                                                                                                        
           _________________                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.6
Translation
(A) 		0.7
Closure
(%) 		82.6
Bending Residues
( green ) 		  82 - 86
  127 - 128
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download