Nadp-Dependent Alcohol Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nadp-Dependent Alcohol Dehydrogenase
  Conformer 1
(PDB)
1jqb (A)
  Conformer 2
(PDB)
1kev (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 181 0.57   1079 - 1083   1090 - 1102   1107 - 1110   1115 - 1115   1136 - 1142   1148 - 1199   1202 - 1289   1308 - 1318
2 166 0.63   1003 - 1078   1084 - 1089   1103 - 1106   1111 - 1114   1116 - 1135   1143 - 1147   1200 - 1201   1290 - 1307   1319 - 1349

Sequence


           __________________________________________________________________________1078_1083__1089_________1102____1110__________ 
 1jqb(A) : MKGFAMLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVF 
         :                                                                                                                          
 1kev(B) : MKGFAMLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVF 
           ____________________________________________________________________________78___83____89__________102_106_110__________ 

           ___________1135___1142_1147_______________________________________________1198__________________________________________ 
 1jqb(A) : GEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVI 
         :                                                                                                                          
 1kev(B) : GEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIVDQVMKLTNGKGVDRVI 
           ____________135____142__147________________________________________________198__________________________________________ 

           _____________________________________________1289______________1307_______1318_________________________________          
 1jqb(A) : MAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERLRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAVVIL          
         :                                                                                                                          
 1kev(B) : MAGGGSETLSQAVSMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAEMLRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAVVIL          
           ______________________________________________289_______________307________318_________________________________          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.4
Translation
(A)
-0.4
Closure
(%)
59.4
Bending Residues
( green )
  1078 - 1079
  1083 - 1084
  1089 - 1090
  1102 - 1103
  1106 - 1107
  1110 - 1117
  1135 - 1136
  1142 - 1143
  1147 - 1148
  1198 - 1202
  1289 - 1290
  1307 - 1308
  1318 - 1319
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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