Nad(p) Transhydrogenase Subunit Alpha Part 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad(p) Transhydrogenase Subunit Alpha Part 1
  Conformer 1
(PDB) 		1u28 (A)
  Conformer 2
(PDB) 		1l7d (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 177 0.84   40 - 42   135 - 138   140 - 334
2 165 0.75   4 - 39   43 - 134   139 - 139   335 - 370

Sequence


           _____________________________________39_42______________________________________________________________________________ 
 1u28(A) : MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAY 
         :                                                                                                                          
 1l7d(B) : MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAY 
           ____________________________________439_________________________________________________________________________________ 

           ___________134_138______________________________________________________________________________________________________ 
 1u28(A) : AMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMG 
         :                                                                                                                          
 1l7d(B) : AMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIT-------------------- 
           ___________534_538______________________________________________________________________________________________________ 

           ___________________________________________________________________________________________334__________________________ 
 1u28(A) : EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLED 
         :                                                                                                                          
 1l7d(B) : -----kQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLED 
           ___________________________________________________________________________________________734__________________________ 

           _______________________                                                                                                  
 1u28(A) : ETVSGTCVTRDGAIVHPA*****                                                                                                  
         :                                                                                                                          
 1l7d(B) : ETVSGTCVTRDGAIVHPALTGQG                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.2
Translation
(A) 		0.4
Closure
(%) 		20.4
Bending Residues
( green ) 		  39 - 40
  42 - 43
  134 - 135
  138 - 140
  334 - 335
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download