Nad(p) Transhydrogenase Subunit Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad(p) Transhydrogenase Subunit Alpha
  Conformer 1
(PDB) 		1x14 (B)
  Conformer 2
(PDB) 		1x15 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 316 0.8   1004 - 1073   1079 - 1093   1105 - 1349
2 39 0.41   1074 - 1078   1094 - 1104   1350 - 1372

Sequence


           ________________________________________________________________________1073_1078___________1093_______1104_____________ 
 1x14(B) : HHHGRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDS 
         :                                                                                                                          
 1x15(A) : ***GRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDS 
           ________________________________________________________________________1073_1078___________1093_______1104_____________ 

           ________________________________________________________________________________________________________________________ 
 1x14(B) : VPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELD--------mSDAFIKAEMELFA 
         :                                                                                                                          
 1x15(A) : VPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFgDGYAKVMSDAFIKAEMELFA 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________1349______________ 
 1x14(B) : AQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTVIRA 
         :                                                                                                                          
 1x15(A) : AQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTVIRA 
           ______________________________________________________________________________________________________1349______________ 

           _____________                                                                                                            
 1x14(B) : GEITWPAPPIQV*                                                                                                            
         :                                                                                                                          
 1x15(A) : GEITWPAPPIQVS                                                                                                            
           _____________                                                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.3
Translation
(A) 		0.2
Closure
(%) 		43.4
Bending Residues
( green ) 		  1073 - 1074
  1078 - 1079
  1093 - 1094
  1104 - 1105
  1349 - 1350
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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