Nagk Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nagk Protein
  Conformer 1
(PDB) 		2ch6 (D)
  Conformer 2
(PDB) 		2ch6 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 195 0.6   121 - 307   335 - 342
2 111 2.47   8 - 120   308 - 334

Sequence


           ____________________________________________________________________________________________________________________120_ 
 2ch6(D) : AAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGV 
         :                                                                                                                          
 2ch6(B) : ****GGVEGGGTRSEVL-----------aDGLSTNH--iGTDKCVERINEM--------gVDPLVPLRSLGLSLSGG--eDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGV 
           ____________________________________________________________________________________________________________________120_ 

           ________________________________________________________________________________________________________________________ 
 2ch6(D) : VLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEM 
         :                                                                                                                          
 2ch6(B) : VLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEM 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________306_________________________334__________                  
 2ch6(D) : LGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS                  
         :                                                                                                                          
 2ch6(B) : LGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARH------mDYSANAIAFYSYTFS                  
           ______________________________________________________________306_________________________334__________                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.4
Translation
(A) 		-1.7
Closure
(%) 		96.4
Bending Residues
( green ) 		  120 - 121
  306 - 308
  334 - 335
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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