Nedd9 Interacting Protein With Calponin Homology And Lim Domains

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nedd9 Interacting Protein With Calponin Homology And Lim Domains
  Conformer 1
(PDB)
2bry (B)
  Conformer 2
(PDB)
2c4c (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 331 0.57   9 - 129   134 - 142   155 - 231   354 - 357   366 - 485
2 141 0.83   130 - 133   143 - 154   232 - 353   358 - 365

Sequence


           ________________________________________________________________________________________________________________________ 
 2bry(B) : TNPAHDHFETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH 
         :                                                                                                                          
 2c4c(A) : TNPAHDHFETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH 
           ________________________________________________________________________________________________________________________ 

           129_133______142_________154__________________________________________________________________________231_______________ 
 2bry(B) : LWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVN 
         :                                                                                                                          
 2c4c(A) : LWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVN 
           129_133______142_________154__________________________________________________________________________231_______________ 

           ____________________________________________________________________________________________________353_357_____365_____ 
 2bry(B) : GRTVEETQVPEISGyNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTSMM 
         :                                                                                                                          
 2c4c(A) : GRTVEETQVPEIS-yNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTSMM 
           ____________________________________________________________________________________________________353_357_____365_____ 

           _______________________________________________________________________________________________________________________  
 2bry(B) : RAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGAGPLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMDKE  
         :                                                                                                                          
 2c4c(A) : RAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGAGPLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMD**  
           _______________________________________________________________________________________________________________________  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.9
Translation
(A)
0.0
Closure
(%)
87.5
Bending Residues
( green )
  129 - 130
  133 - 134
  142 - 143
  154 - 155
  231 - 232
  353 - 354
  357 - 358
  365 - 366
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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