Nitrogenase Molybdenum-Iron Protein Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nitrogenase Molybdenum-Iron Protein Alpha Chain
  Conformer 1
(PDB) 		1l5h (A)
  Conformer 2
(PDB) 		1m1n (E)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 373 1.24   53 - 350   361 - 374   412 - 422   427 - 476
2 24 4.3   351 - 360   375 - 411   423 - 426

Sequence


           ________________________________________________________________________________________________________________________ 
 1l5h(A) : *********************************************NKKSQPGLMTIRGCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSRAGRRNYYIGTTGVNAFVTMNFTSDFQEKDI 
         :                                                                                                                          
 1m1n(E) : MSREEVESLIQEVLEVYPEKARKDRNKHLAVNDPAVTQSKKCIISNKKSQPGLMTIRGCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSRAGRRNYYIGTTGVNAFVTMNFTSDFQEKDI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1l5h(A) : VFGGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLE 
         :                                                                                                                          
 1m1n(E) : VFGGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________350____357______ 
 1l5h(A) : EMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHV 
         :                                                                                                                          
 1m1n(E) : EMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHV 
           ________________________________________________________________________________________________________350____357______ 

           ________374__________________________________411_____419____426______________________________________________________    
 1l5h(A) : IGAYEDLGMEVVGTGYE---------------------------eFEEFVKRIKPDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYHGFDGFAIFARDMDMTLNNPCWKKLQAPWE    
         :                                                                                                                          
 1m1n(E) : IGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKPDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYHGFDGFAIFARDMDMTLNNPCWKKLQAPWE    
           ________374__________________________________411_____419____426______________________________________________________    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		46.8
Translation
(A) 		-0.4
Closure
(%) 		92.5
Bending Residues
( green ) 		  350 - 351
  357 - 367
  374 - 375
  411 - 415
  419 - 423
  426 - 429
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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