Octamer-Binding Transcription Factor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Octamer-Binding Transcription Factor 1
  Conformer 1
(PDB)
1hf0 (B)
  Conformer 2
(PDB)
1cqt (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 62 0.93   9 - 70
2 48 0.6   109 - 156

Sequence


           ___________________________________________________________________70___________________________________________________ 
 1hf0(B) : ****LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAErKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRV 
         :                                                                                                                          
 1cqt(A) : EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAErKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRV 
           ___________________________________________________________________70___________________________________________________ 

           ______________                                                                                                           
 1hf0(B) : WFSNRRQKEKRI**                                                                                                           
         :                                                                                                                          
 1cqt(A) : WFCNRRQKEKRINP                                                                                                           
           ______________                                                                                                           

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.2
Translation
(A)
-0.8
Closure
(%)
98.4
Bending Residues
( green )
  70 - 109
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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