Orf3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Orf3
  Conformer 1
(PDB) 		1mok (D)
  Conformer 2
(PDB) 		1mo9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 43 0.38   6 - 8   11 - 31   133 - 151
2 169 0.48   4 - 5   9 - 10   32 - 83   152 - 186   223 - 228   313 - 381   387 - 389
3 303 0.6   84 - 129   187 - 222   229 - 312   382 - 386   390 - 521

Sequence


           ___5__8_____________________31_________________________________________________82_______________________________________ 
 1mok(D) : KVWNARNDHLTINQWATRIDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVG 
         :                                                                                                                          
 1mo9(A) : KVWNARNDHLTINQWATRIDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVG 
           ___5__8_____________________31_________________________________________________82_______________________________________ 

           _____129___________________151_______________________________185__________________________________222___228_____________ 
 1mok(D) : IKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTV 
         :                                                                                                                          
 1mo9(A) : IKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTV 
           _____129___________________151_______________________________185__________________________________222___228_____________ 

           ____________________________________________________________________312_________________________________________________ 
 1mok(D) : MLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEM 
         :                                                                                                                          
 1mo9(A) : MLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEM 
           ____________________________________________________________________312_________________________________________________ 

           _________________381__386_______________________________________________________________________________________________ 
 1mok(D) : FKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYL 
         :                                                                                                                          
 1mo9(A) : FKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYL 
           _________________381__386_______________________________________________________________________________________________ 

           __________________________________________                                                                               
 1mok(D) : NVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRAGSKNLVSL                                                                               
         :                                                                                                                          
 1mo9(A) : NVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRAGSKNLVSL                                                                               
           __________________________________________                                                                               

Morph
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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 5.8 -0.2 32.0   5 - 6   8 - 11   31 - 32   151 - 152 Bending Region Analysis
1 3 11.8 -0.4 95.4   129 - 133 Bending Region Analysis
2 3 6.2 0.0 46.6   82 - 84   185 - 187   222 - 225   228 - 229   312 - 313   381 - 382   386 - 387   389 - 390 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification: Hinge

PyMOL Script

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