Ornithine Carbamoyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ornithine Carbamoyltransferase
  Conformer 1
(PDB) 		1dxh (A)
  Conformer 2
(PDB) 		1ort (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 189 0.78   12 - 19   22 - 22   140 - 142   144 - 320
2 142 0.69   3 - 11   20 - 21   23 - 139   143 - 143   321 - 333

Sequence


           _______8_________19_____________________________________________________________________________________________________ 
 1dxh(A) : AFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKF 
         :                                                                                                                          
 1ort(A) : AFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIGYRGFKQEIVEELAKF 
           _______8_________19_____________________________________________________________________________________________________ 

           ________________139_____________________________________________________________________________________________________ 
 1dxh(A) : AGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPV 
         :                                                                                                                          
 1ort(A) : AGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPV 
           ________________139_____________________________________________________________________________________________________ 

           _____________________________________________________________________________320_______________                          
 1dxh(A) : EAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLADI                          
         :                                                                                                                          
 1ort(A) : EAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLADI                          
           _____________________________________________________________________________320_______________                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.7
Translation
(A) 		0.0
Closure
(%) 		61.4
Bending Residues
( green ) 		  8 - 15
  19 - 23
  139 - 140
  142 - 144
  320 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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