Orotidine 5'-Monophosphate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Orotidine 5'-Monophosphate Decarboxylase
  Conformer 1
(PDB)
1eix (C)
  Conformer 2
(PDB)
1l2u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 174 0.76   14 - 16   20 - 187   239 - 241
2 45 0.66   17 - 19   188 - 238

Sequence


           ____16_19_______________________________________________________________________________________________________________ 
 1eix(C) : *VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVL 
         :                                                                                                                          
 1l2u(A) : AVTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVL 
           ____16_19_______________________________________________________________________________________________________________ 

           ______________________________________________________187_______________________________________________237______        
 1eix(C) : TSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQR        
         :                                                                                                                          
 1l2u(A) : TSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQ---------iMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQR        
           ______________________________________________________187_______________________________________________237______        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.5
Translation
(A)
0.0
Closure
(%)
98.4
Bending Residues
( green )
  16 - 17
  19 - 20
  187 - 188
  237 - 239
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download