O-Succinylbenzoate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name O-Succinylbenzoate Synthase
  Conformer 1
(PDB) 		1fhu (A)
  Conformer 2
(PDB) 		1r6w (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 192 0.85   3 - 131   228 - 247   253 - 317
2 101 0.52   132 - 227   248 - 252

Sequence


           ________________________________________________________________________________________________________________________ 
 1fhu(A) : **MRSAQVYRWQIPMD--------lKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELPQMPSVAFGVSCALAELTDTLPQAANYRAAPLCNGD------ 
         :                                                                                                                          
 1r6w(A) : SHMRSAQVYRWQIPMDAGVVLdRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELPQMPSVAFGVSCALAELTDTLPQAANYRAAPLCNGDPDDLIL 
           ________________________________________________________________________________________________________________________ 

           _________131__________________________________________________________________________________________224_______________ 
 1fhu(A) : -------eKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRAFARETGIAIAWDESLREPDFAFVAEEGVRAVVIKPTLT 
         :                                                                                                                          
 1r6w(A) : KLADMPGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRAFARETGIAIAWDESLREPDFAFVAEEGVRAVVIKPTLT 
           _________131__________________________________________________________________________________________224_______________ 

           _____247_________________________________________________________________________                                        
 1fhu(A) : GSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL                                        
         :                                                                                                                          
 1r6w(A) : GSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL                                        
           _____247_________________________________________________________________________                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.9
Translation
(A) 		-0.2
Closure
(%) 		54.1
Bending Residues
( green ) 		  131 - 134
  224 - 228
  247 - 253
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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