Outer Surface Protein A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Outer Surface Protein A
  Conformer 1
(PDB)
2fkj (B)
  Conformer 2
(PDB)
2fkj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 186 0.66   31 - 212   214 - 217
2 170 0.66   213 - 213   218 - 386

Sequence


           ________________________________________________________________________________________________________________________ 
 2fkj(B) : NSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGELSEKKITRADKSSTEE 
         :                                                                                                                          
 2fkj(A) : NSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGELSEKKITRADKSSTEE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________206________217__________________________________________________ 
 2fkj(B) : KFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKS 
         :                                                                                                                          
 2fkj(A) : KFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKS 
           ________________________________________________________206________217__________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2fkj(B) : DGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNAL 
         :                                                                                                                          
 2fkj(A) : DGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNAL 
           ________________________________________________________________________________________________________________________ 

           _                                                                                                                        
 2fkj(B) : K                                                                                                                        
         :                                                                                                                          
 2fkj(A) : K                                                                                                                        
           _                                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.9
Translation
(A)
-0.7
Closure
(%)
74.5
Bending Residues
( green )
  206 - 214
  217 - 222
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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