Ovotransferrin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ovotransferrin
  Conformer 1
(PDB) 		1aov  
  Conformer 2
(PDB) 		1dot  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 369 0.8   3 - 91   247 - 430   589 - 684
2 155 0.54   92 - 246
3 158 0.46   431 - 588

Sequence


           _______________________________________________________________________________________89_______________________________ 
 1aov    : APPKTTVRWCTISSAEEKKCNSLKDHMQQERVTLSCVQKATYLDCIKAISNNEADAISLDGGQVFEAGLAPYKLKPIAAEVYERSGGSTTSYyAVAVVKKGTDFMIKDLRGKTSCHTGLG 
         :                                                                                                                          
 1dot    : APPKTTVRWCTISSAEEKKCNSLKDHMQQERVTLSCVQKATYLDCIKAISNNEADAISLDGGQVFEAGLAPYKLKPIAAEVYERSGGSTTSYYAVAVVKKGTDFMIKDLRGKTSCHTGLG 
           _______________________________________________________________________________________89_______________________________ 

           ________________________________________________________________________________________________________________________ 
 1aov    : RSAGWNIPIGTLIHREDIEWEGIESGISEQAVAKFFSASCVPGATIEQKLCRQCKGDAKTKCLRNGPYSGYSGAFQCLKDGKGDVAFVKHTTVQENAPEEKDEYELLCLDGSRQPVDSYK 
         :                                                                                                                          
 1dot    : RSAGWNIPIGTLIHREDIEWEGIESGISEQAVAKFFSASCVPGATIEQKLCRQCKGDAKTKCLRNGPYSGYSGAFQCLKDGKGDVAFVKHTTVQENAPEEKDEYELLCLDGSRQPVDSYK 
           ________________________________________________________________________________________________________________________ 

           ___246__________________________________________________________________________________________________________________ 
 1aov    : TCNWArVAAHAVVARDDSKIDDIWSFLGMQAYSLGVDTTSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPELMDSQLYLGFEYYSAIQSLRKDQLTVGPRENKiQWCAVGKDEKSKCDR 
         :                                                                                                                          
 1dot    : TCNWARVAAHAVVARDDSKIDDIWSFLGMQAYSLGVDTTSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPELMDSQLYLGFEYYSAIQSLRKDQLTVGPRENKIQWCAVGKDEKSKCDR 
           ___246__________________________________________________________________________________________________________________ 

           __________________________________________________________________429___________________________________________________ 
 1aov    : WSVVSNGEVECTILDDNKDCIVKITKGEADAISLDGGFVYTAGVCGLVPVVGESYEDETQCSKDEEQPAYYFaVAVVKKSSAITWNNLQGKKSCHTAVGRTAGWNIPMGLIHNKTGSCDF 
         :                                                                                                                          
 1dot    : WSVVSNGEVECTILDDNKDCIVKITKGEADAISLDGGFVYTAGVCGLVPVVGESYEDETQCSKDEEQPAYYFAVAVVKKSSAITWNNLQGKKSCHTAVGRTAGWNIPMGLIHNKTGSCDF 
           __________________________________________________________________429___________________________________________________ 

           _________________________________________________________________________________________________________588____________ 
 1aov    : DDYFSEGCAPGSPPNSRLCKLCQGSGENLLEKCVASSHEKYYGYTGALRCLVEQGDVAFIKHSTVGENVSGSNKDDWAKGLTRDDFELLCTNGKRAKTMDYKTCHLAkVPTHAVVARPEK 
         :                                                                                                                          
 1dot    : DDYFSEGCAPGSPPNSRLCKLCQGSGENLLEKCVASSHEKYYGYTGALRCLVEQGDVAFIKHSTVGENVSGSNKDDWAKGLTRDDFELLCTNGKRAKTMDYKTCHLAKVPTHAVVARPEK 
           _________________________________________________________________________________________________________588____________ 

           ______________________________________________________________________________________                                   
 1aov    : ANKIRELLEGQEKLFGLHGTEKERFMMFQSQTKDLLFKALTKCLVKLRQGITYKEFLGDEYYASVASLNTCNPSDLLQVCTFLEDK                                   
         :                                                                                                                          
 1dot    : ANKIRELLEGQEKLFGLHGTEKERFMMFQSQTKDLLFKALTKCLVKLRQGITYKEFLGDEYYASVASLNTCNPSDLLQVCTFLEDK                                   
           ______________________________________________________________________________________                                   

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		51.6
Translation
(A) 		-0.7
Closure
(%) 		94.2
Bending Residues
( green ) 		  89 - 93
  246 - 248
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		51.1
Translation
(A) 		0.4
Closure
(%) 		91.7
Bending Residues
( green ) 		  429 - 431
  588 - 592
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download