DynDom - Protein Domain Motions

Ovotransferrin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Ovotransferrin
Conformer 1 (PDB)	1ovt
Conformer 2 (PDB)	1n04 (A)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	409	0.85	8 - 77 80 - 347 363 - 368 373 - 379 382 - 390 411 - 414 416 - 416 421 - 428 595 - 597 604 - 606 609 - 612 623 - 624 647 - 656 660 - 670 677 - 679
2	267	0.83	78 - 79 348 - 362 369 - 372 380 - 381 391 - 410 415 - 415 417 - 420 429 - 594 598 - 603 607 - 608 613 - 622 625 - 646 657 - 659 671 - 676 680 - 683

Sequence

`________________________________________________________________________77______________________________________________` `1ovt : *SVIRWCTISSPEEKKCNNLRDLTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQAFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSA` `:` `1n04(A) : KSVIRWCTISSPEEKKCNNLRDLTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQAFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSA` `________________________________________________________________________77______________________________________________` `________________________________________________________________________________________________________________________` `1ovt : GWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSASCVPGATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQKDEYELLCLDGSRQPVDNYKTCN` `:` `1n04(A) : GWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSASCVPGATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQKDEYELLCLDGSRQPVDNYKTCN` `________________________________________________________________________________________________________________________` `_____________________________________________________________________________________________________347____________362_` `1ovt : WARVAAHAVVARDDNKVEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPSLMDSQLYLGFEYYSAIQSMRKDQLTPSPRENRIQWCAVGKDEKSKCDRWSV` `:` `1n04(A) : WARVAAHAVVARDDNKVEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPSLMDSQLYLGFEYYSAIQSMRKDQLTPSPRENRIQWCAVGKDEKSKCDRWSV` `_____________________________________________________________________________________________________347____________362_` `__368_372____379________390_________________410_414___420_____428_______________________________________________________` `1ovt : VSNGDVECTVVDETKDCIIKIMKGEADAVALDGGLVYTAGVCGLVPVMAERYDDESQCSKTDERPASYFAVAVARKDSNVNWNNLKGKKSCHTAVGRTAGWVIPMGLIHNRTGTCNFDEY` `:` `1n04(A) : VSNGDVECTVVDETKDCIIKIMKGEADAVALDGGLVYTAGVCGLVPVMAERYDDESQCSKTDERPASYFAVAVARKDSNVNWNNLKGKKSCHTAVGRTAGWVIPMGLIHNRTGTCNFDEY` `__368_372____379________390_________________410_414___420_____428_______________________________________________________` `____________________________________________________________________________________________________________594______603` `1ovt : FSEGCAPGSPPNSRLCQLCQGSGGIPPEKCVASSHEKYFGYTGALRCLVEKGDVAFIQHSTVEENTGGKNKADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVRPEKANK` `:` `1n04(A) : FSEGCAPGSPPNSRLCQLCQGSGGIPPEKCVASSHEKYFGYTGALRCLVEKGDVAFIQHSTVEENTGGKNKADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVRPEKANK` `____________________________________________________________________________________________________________594______603` `______612_______622_____________________646_______656____663__________676__________` `1ovt : IRDLLERQEKRFGVNGSEKSKFMMFESQNKDLLFKDLTKCLFKVREGTTYKEFLGDKFYTVISSLKTCNPSDILQMCSFLEGK` `:` `1n04(A) : IRDLLERQEKRFGVNGSEKSKFMMFESQNKDLLFKDLTKCLFKVREGTTYKEFLGDKFYTVISSLKTCNPSDILQMCSFLEGK` `______612_______622_____________________646_______656____663__________676__________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.7
Translation (A)	-0.2
Closure (%)	65.6
Bending Residues ( green )	77 - 80 347 - 348 362 - 363 368 - 369 372 - 373 379 - 382 390 - 391 410 - 411 414 - 417 420 - 421 428 - 429 594 - 595 597 - 598 603 - 604 606 - 609 612 - 613 622 - 625 646 - 647 656 - 657 659 - 660 663 - 673 676 - 677 679 - 680
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

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