Oxidoreductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Oxidoreductase
  Conformer 1
(PDB) 		1ynp (A)
  Conformer 2
(PDB) 		1ynp (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 222 0.54   4 - 17   42 - 44   74 - 293
2 32 0.69   24 - 41   60 - 73

Sequence


           ________________17______________________41_____________________________72_______________________________________________ 
 1ynp(A) : HMKKRQLGTSDLHVSELGFGCMSLGTDETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKV---------------sKAYIKEAVKDSLRRLQTDYIDLYQLH 
         :                                                                                                                          
 1ynp(B) : HMKKRQLGTSDLHVSELGFGCMSLGTDETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKVGNRFEQGKEGWWWDPSKAYIKEAVKDSLRRLQTDYIDLYQLH 
           ________________17______________________41_____________________________72_______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ynp(A) : GGTIDDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPLPEGEGYLNYRYDELKLLRESLPTDRPLHEL 
         :                                                                                                                          
 1ynp(B) : GGTIDDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPLPEGEGYLNYRYDELKLLRESLPTDRPLHEL 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________                                                               
 1ynp(A) : ALQYCLAHDVVATVAAGASSIDQVKANVQAVEATPLTAEERQHIQKLAKAAVYEQHRE                                                               
         :                                                                                                                          
 1ynp(B) : ALQYCLAHDVVATVAAGASSIDQVKANVQAVEATPLTAEERQHIQKLAKAAVYEQHRE                                                               
           __________________________________________________________                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.5
Translation
(A) 		0.2
Closure
(%) 		99.8
Bending Residues
( green ) 		  17 - 24
  41 - 60
  72 - 74
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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