Pals1-Associated Tight Junction Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pals1-Associated Tight Junction Protein
  Conformer 1
(PDB)
1vf6 (B)
  Conformer 2
(PDB)
1vf6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 28 0.47   14 - 41
2 26 0.28   42 - 67

Sequence


           ______________________________41____________________________                                                             
 1vf6(B) : LQVLQVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLNHILE                                                             
         :                                                                                                                          
 1vf6(A) : **VLQVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLNHILE                                                             
           ______________________________41____________________________                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.3
Translation
(A)
1.1
Closure
(%)
54.4
Bending Residues
( green )
  41 - 43
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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