Pantoate--Beta-Alanine Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pantoate--Beta-Alanine Ligase
  Conformer 1
(PDB) 		1iho (B)
  Conformer 2
(PDB) 		1iho (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 176 0.4   3 - 178
2 102 0.69   179 - 280

Sequence


           ________________________________________________________________________________________________________________________ 
 1iho(B) : MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTETHTYVDVPGLSTMLEG 
         :                                                                                                                          
 1iho(A) : MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTETHTYVDVPGLSTMLEG 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________175_________________________________________________________________ 
 1iho(B) : ASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIRKMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEIITIAGQELNEKGFRA 
         :                                                                                                                          
 1iho(A) : ASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIRKMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEIITIAGQELNEKGFRA 
           ____________________________________________________175_________________________________________________________________ 

           __________________________________________                                                                               
 1iho(B) : DDIQIRDADTLLEVSETSKRAVILVAAWLGDARLIDNKMVEL                                                                               
         :                                                                                                                          
 1iho(A) : DDIQIRDADTLLEVSETSKRAVILVAAWLGDARLIDNKMVEL                                                                               
           __________________________________________                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.1
Translation
(A) 		0.9
Closure
(%) 		93.6
Bending Residues
( green ) 		  175 - 179
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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