Pcf11 Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pcf11 Protein
  Conformer 1
(PDB)
1sz9 (C)
  Conformer 2
(PDB)
1sza (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 82 0.6   6 - 83   123 - 126
2 50 0.61   84 - 122   127 - 137

Sequence


           ________________________________________________________________________________83____________________________________12 
 1sz9(C) : DHDTEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLP 
         :                                                                                                                          
 1sza(B) : **DTEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLP 
           ________________________________________________________________________________83____________________________________12 

           2_____________________                                                                                                   
 1sz9(C) : LFEGSALEKIEQFLIKASAA**                                                                                                   
         :                                                                                                                          
 1sza(B) : LFEGSALEKIEQFLIKASAAAL                                                                                                   
           2_____________________                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.6
Translation
(A)
-0.4
Closure
(%)
92.1
Bending Residues
( green )
  83 - 84
  122 - 128
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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