Peptide Chain Release Factor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Peptide Chain Release Factor 1
  Conformer 1
(PDB) 		1rq0 (C)
  Conformer 2
(PDB) 		1rq0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 209 0.48   887 - 920   922 - 942   948 - 1090   1092 - 1101   1104 - 1114   1116 - 1124
2 99 0.73   805 - 886   921 - 921   943 - 947   1091 - 1091   1102 - 1103   1115 - 1115   1125 - 1131

Sequence


           ___________________________________________________________________________________886_______________________________920 
 1rq0(C) : MKEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKG 
         :                                                                                                                          
 1rq0(A) : MKEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKG 
           ____________________________________________________________________________________86_______________________________120 

           ___________________942__947_____________________________________________________________________________________________ 
 1rq0(C) : WNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASG-----eSAVRITHLPTGIVVSCQNERSQYQNKQ 
         :                                                                                                                          
 1rq0(A) : WNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGyVNKTESAVRITHLPTGIVVSCQNERSQYQNKQ 
           ___________________142__147_____________________________________________________________________________________________ 

           ________________________________1090_______1101_________1114_____1123__________                                          
 1rq0(C) : TALRILRARLYQLQKEQKEREISQrSEKIRTYNFPQNRVTDHRINYTSYRLQEILDGDLDEIISKLIEHDIENNLEEVL                                          
         :                                                                                                                          
 1rq0(A) : TALRILRARLYQLQKEQKEREISQrSEKIRTYNFPQNRVTDHRINYTSYRLQEILDGDLDEIISKLIEHDIENNLEEVL                                          
           _________________________________290________301__________314______323__________                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.4
Translation
(A) 		-0.1
Closure
(%) 		18.2
Bending Residues
( green ) 		  886 - 887
  920 - 922
  942 - 943
  947 - 948
  1090 - 1092
  1101 - 1104
  1114 - 1116
  1123 - 1125
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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