DynDom - Protein Domain Motions

Peptidase T

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Peptidase T
Conformer 1 (PDB)	1fno (A)
Conformer 2 (PDB)	1vix (A)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	277	0.42	5 - 207 321 - 352 355 - 405
2	110	0.48	208 - 320 353 - 354

Sequence

`________________________________________________________________________________________________________________________` `1fno(A) : **DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEE-gLVNITLSEKGTL-aTLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPV-fP` `:` `1vix(A) : MSLDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFP` `________________________________________________________________________________________________________________________` `______________________________________________________________________________________207_______________________________` `1fno(A) : VLHQLLGQTLITTDGKTLLGADDKAGVAEI-tALAVLKGNPIPHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGV-vNALSLA` `:` `1vix(A) : VLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLA` `______________________________________________________________________________________207_______________________________` `_______________________________________________________________________________320_____________________________352______` `1fno(A) : ARIHAEVPADEAPETTEGYEGFYHLAS-kGTVDRAE-hYIIRDFDRKQFEARKRK--eIAKKVGKGLHPDCYIELVIEDSYYN-rEKVVEHPHILDIAQQA-rDCHITPE-kPIRGGTDG` `:` `1vix(A) : ARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDG` `_______________________________________________________________________________320_____________________________352______` `___________________________________________________` `1fno(A) : AQLSF-gLPCPNLFTGGYNYHGKHEFVTLEG-eKAVQVIVRIAELTAKRG` `:` `1vix(A) : AQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRKE` `___________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.7
Translation (A)	-0.2
Closure (%)	53.1
Bending Residues ( green )	207 - 208 320 - 321 352 - 355
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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