Perfringolysin O

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Perfringolysin O
  Conformer 1
(PDB) 		1pfo  
  Conformer 2
(PDB) 		1m3i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 200 0.88   38 - 59   89 - 91   94 - 181   200 - 202   230 - 274   323 - 329   347 - 378
2 133 0.61   65 - 81   383 - 498
3 121 0.74   82 - 88   92 - 93   182 - 199   203 - 229   275 - 322   330 - 346   379 - 380

Sequence


           ____________________________59__________________79_______88_91__________________________________________________________ 
 1pfo    : DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKALVENRPTILMVKRKPININIDLPGLKGENSIKVDDP 
         :                                                                                                                          
 1m3i(A) : ******QSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQLADKALVENRPTILMVKRKPININIDLPGLKGENSIKVDDP 
           ____________________________59__________________79_______88_91__________________________________________________________ 

           _____________________________181_______________199___________________________229________________________________________ 
 1pfo    : TYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVS 
         :                                                                                                                          
 1m3i(A) : TYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVS 
           _____________________________181_______________199___________________________229________________________________________ 

           __274_____________________________________________322_____________________346_____________________________378___________ 
 1pfo    : NVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEY 
         :                                                                                                                          
 1m3i(A) : NVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEY 
           __274_____________________________________________322_____________________346_____________________________378___________ 

           _______________________________________________________________________________________________________________          
 1pfo    : SKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN          
         :                                                                                                                          
 1m3i(A) : SKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN          
           _______________________________________________________________________________________________________________          

Morph
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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 14.8 3.6 98.3   59 - 66 Bending Region Analysis
1 3 7.9 -0.3 12.2   88 - 89   91 - 94   181 - 182   199 - 200   202 - 203   229 - 230   274 - 275   322 - 332   346 - 347   378 - 379 Bending Region Analysis
2 3 16.1 1.7 58.1   79 - 82   380 - 386 Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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