Periplasmic Iron-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Periplasmic Iron-Binding Protein
  Conformer 1
(PDB) 		1d9y (A)
  Conformer 2
(PDB) 		1o7t (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 156 0.69   102 - 225   276 - 307
2 149 0.6   3 - 101   226 - 275

Sequence


           __________________________________________________________________________________________________101___________________ 
 1d9y(A) : DITVYNGQHKEAAQAVADAFTRATGIKVKLNCAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKS 
         :                                                                                                                          
 1o7t(D) : DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKS 
           __________________________________________________________________________________________________101___________________ 

           ______________________________________________________________________________________________________225_______________ 
 1d9y(A) : VLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKD 
         :                                                                                                                          
 1o7t(D) : VLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKD 
           ______________________________________________________________________________________________________225_______________ 

           __________________________269________________________________________                                                    
 1d9y(A) : EAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK                                                    
         :                                                                                                                          
 1o7t(D) : EAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK                                                    
           __________________________269________________________________________                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		27.8
Translation
(A) 		0.3
Closure
(%) 		94.1
Bending Residues
( green ) 		  101 - 102
  225 - 227
  269 - 280
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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