Peroxisomal Hydratase-Dehydrogenase-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Peroxisomal Hydratase-Dehydrogenase-Epimerase
  Conformer 1
(PDB) 		1pn2 (A)
  Conformer 2
(PDB) 		1pn2 (D)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 180 0.96   10 - 61   79 - 79   86 - 97   154 - 270
2 78 0.67   62 - 78   80 - 85   98 - 153

Sequence


           ________________________________________________________61______________78_____85__________97___________________________ 
 1pn2(A) : DPVWRFDDRDVILYNIALGATTKQLKYVYENDSDFQVIPTFGHLITFNSGKSQNSFAKLLRNFNPlLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKSVDNKSGELI 
         :                                                                                                                          
 1pn2(D) : *PVWRFDDRDVILYNIALGATTKQLKYVYENDSDFQVIPTFGHLITFNSGKSQNSFAKLLRNFNPlLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKSVDNKSGELI 
           ________________________________________________________61______________78_____85__________97___________________________ 

           __________________________153___________________________________________________________________________________________ 
 1pn2(A) : YSNEATYFIRNCQADNKVYADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGcTYGLSAKALIDKFGfNEIKARFTGIVFPGETLRVLAWK 
         :                                                                                                                          
 1pn2(D) : YSNEATYFIRNCQADNKVYADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGcTYGLSAKALIDKFGfNEIKARFTGIVFPGETLRVLAWK 
           __________________________153___________________________________________________________________________________________ 

           ______________________________                                                                                           
 1pn2(A) : ESDDTIVFQTHVVDRGTIAINNAAIKLVG*                                                                                           
         :                                                                                                                          
 1pn2(D) : ESDDTIVFQTHVVDRGTIAINNAAIKLVGD                                                                                           
           ______________________________                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.2
Translation
(A) 		0.1
Closure
(%) 		81.9
Bending Residues
( green ) 		  61 - 62
  78 - 80
  85 - 86
  97 - 99
  153 - 154
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download