Phosophoribosylglycinamide Formyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosophoribosylglycinamide Formyltransferase
  Conformer 1
(PDB) 		1meo (A)
  Conformer 2
(PDB) 		1men (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 99 0.84   3 - 14   20 - 24   29 - 104   140 - 148
2 94 0.4   15 - 19   25 - 28   105 - 139   149 - 198

Sequence


           _____________14___19___24_____________________________________________________________________________104_______________ 
 1meo(A) : *ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSN 
         :                                                                                                                          
 1men(C) : RILVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSN 
           _____________14___19___24_____________________________________________________________________________104_______________ 

           ________________138___________________________________________________________________                                   
 1meo(A) : AHEQALETGVTVTGCTVHFVAE---aGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWVKEEHH                                   
         :                                                                                                                          
 1men(C) : AHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV*****                                   
           ________________138___________________________________________________________________                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.6
Translation
(A) 		0.3
Closure
(%) 		99.4
Bending Residues
( green ) 		  14 - 15
  19 - 20
  24 - 29
  104 - 105
  138 - 149
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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