DynDom - Protein Domain Motions

Phosphoenolpyruvate Carboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Phosphoenolpyruvate Carboxylase
Conformer 1 (PDB)	1jqo (A)
Conformer 2 (PDB)	1jqo (B)
Window Length	9
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	669	0.71	39 - 166 174 - 181 188 - 241 250 - 258 265 - 265 268 - 286 311 - 312 315 - 316 318 - 386 391 - 437 439 - 446 564 - 568 571 - 579 596 - 634 640 - 657 661 - 661 671 - 679 694 - 966
2	227	0.76	167 - 173 182 - 187 242 - 249 259 - 264 266 - 267 287 - 310 313 - 314 317 - 317 387 - 390 438 - 438 447 - 563 569 - 570 580 - 595 635 - 639 658 - 660 662 - 670 680 - 693

Sequence

`________________________________________________________________________________________________________________166____1` `1jqo(A) : IEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADYEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNsDIEETLKRLVSEVGKSPEEVFEALKNQTVD` `:` `1jqo(B) : IEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADYEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNsDIEETLKRLVSEVGKSPEEVFEALKNQTVD` `________________________________________________________________________________________________________________166____1` `73_____181___187___________________________________________________241_____249______258___264___________________286_____` `1jqo(A) : LVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGG` `:` `1jqo(B) : LVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGG` `73_____181___187___________________________________________________241_____249______258___264___________________286_____` `________________310_________________________________________________________________________386_390_____________________` `1jqo(A) : DRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEE` `:` `1jqo(B) : DRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEE` `________________310_________________________________________________________________________386_390_____________________` `_______________________437______446_____________________________________________________________________________________` `1jqo(A) : FLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGP` `:` `1jqo(B) : FLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGP` `_______________________437______446_____________________________________________________________________________________` `_________________________559______568________579_____________595____________________________________634__639____________` `1jqo(A) : YIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGP` `:` `1jqo(B) : YIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGP` `_________________________559______568________579_____________595____________________________________634__639____________` `___657__________670______679___________693______________________________________________________________________________` `1jqo(A) : THLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPiTTLRAIPWIF` `:` `1jqo(B) : THLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPiTTLRAIPWIF` `___657__________670______679___________693______________________________________________________________________________` `________________________________________________________________________________________________________________________` `1jqo(A) : SWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYIT` `:` `1jqo(B) : SWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYIT` `________________________________________________________________________________________________________________________` `________________________________________________________________` `1jqo(A) : TLNVFQAYTLKRIRDPNFKVTPQPPLSKEaGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG` `:` `1jqo(B) : TLNVFQAYTLKRIRDPNFKVTPQPPLSKEaGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG` `________________________________________________________________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	4.1
Translation (A)	-0.2
Closure (%)	81.8
Bending Residues ( green )	166 - 167 173 - 174 181 - 182 187 - 188 241 - 242 249 - 250 258 - 259 264 - 268 286 - 287 310 - 318 386 - 387 390 - 391 437 - 439 446 - 447 559 - 564 568 - 571 579 - 580 595 - 596 634 - 635 639 - 640 657 - 658 660 - 662 670 - 671 679 - 680 693 - 694
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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