Plasminogen Activator Inhibitor-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Plasminogen Activator Inhibitor-1
  Conformer 1
(PDB)
1oc0 (A)
  Conformer 2
(PDB)
1lj5 (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 304 1.94   13 - 182   203 - 324   361 - 372
2 26 2.47   183 - 202   325 - 330

Sequence


           ________________________________________________________________________________________________________________________ 
 1oc0(A) : *****SYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRST 
         :                                                                                                                          
 1lj5(A) : VHHPPSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRST 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________181__________________202______________________________________ 
 1oc0(A) : VKQVDFSEVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAP 
         :                                                                                                                          
 1lj5(A) : VKQVDFSEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAP 
           __________________________________________________________181__________________202______________________________________ 

           _________________________________________________________________________________324___330______________________________ 
 1oc0(A) : YEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVALALQKVKIEVNESGTVASS----------aPEEIIIDRPFLF 
         :                                                                                                                          
 1lj5(A) : YEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIMDRPFLF 
           _________________________________________________________________________________324___330______________________________ 

           ___________________                                                                                                      
 1oc0(A) : VVRHNPTGTVLFMGQVMEP                                                                                                      
         :                                                                                                                          
 1lj5(A) : VVRHNPTGTVLFMGQVMEP                                                                                                      
           ___________________                                                                                                      

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.2
Translation
(A)
0.8
Closure
(%)
14.0
Bending Residues
( green )
  181 - 183
  202 - 205
  324 - 325
  330 - 363
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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