Polymerase (Dna Directed) Kappa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Polymerase (Dna Directed) Kappa
  Conformer 1
(PDB) 		1t94 (B)
  Conformer 2
(PDB) 		2oh2 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 275 1.65   77 - 408
2 102 1.67   409 - 515

Sequence


           ________________________________________________________________________________________________________________________ 
 1t94(B) : ******************************************************TSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSN 
         :                                                                                                                          
 2oh2(B) : LNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1t94(B) : YHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKqNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPN 
         :                                                                                                                          
 2oh2(B) : YHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIK-nSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPN 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________406______________________________ 
 1t94(B) : TMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTR---rKSMSVERTFSEINKAEEQYSLCQ 
         :                                                                                                                          
 2oh2(B) : TMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQ 
           _______________________________________________________________________________________406______________________________ 

           _________________________________________________________________________________                                        
 1t94(B) : ELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRAST--sVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFP                                        
         :                                                                                                                          
 2oh2(B) : ELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFP                                        
           _________________________________________________________________________________                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		144.0
Translation
(A) 		3.2
Closure
(%) 		36.9
Bending Residues
( green ) 		  406 - 414
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download